Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs11770232 chr7:43989516 C/T 1.73E-7 492 31.4 33.38 33.7 KM Plot
THCA rs11770244 chr7:43950363 T/G 2.6E-9 502 31.15 33.52 30.83 KM Plot
THCA rs11770438 chr7:43953928 G/C 2.6E-9 502 31.15 33.52 30.83 KM Plot
THCA rs11771439 chr7:43960835 G/A 1.66E-9 501 31.03 33.5 31.03 KM Plot
THCA rs11772346 chr7:43961664 G/A 1.66E-9 501 31.03 33.5 31.03 KM Plot
THCA rs11772904 chr7:43974645 A/G 1.96E-9 498 31.03 33.52 31.03 KM Plot
THCA rs11773572 chr7:43950485 C/T 1.52E-9 503 31.03 33.53 31.03 KM Plot
THCA rs11773904 chr7:43998473 G/A 2.23E-8 503 31.15 33.5 32.37 KM Plot
THCA rs11783173 chr8:8362710 C/T 7.38E-5 503 32.35 30.4 22.83 KM Plot
THCA rs11783980 chr8:60168570 G/T 9.17E-5 500 31.83 30.38 20.5 KM Plot
THCA rs118001891 chr7:32768476 T/C 0.000103 495 31.43 32.9 31.97 KM Plot
THCA rs11804463 chr1:6002570 A/G 9.33E-5 500 18.58 28.92 32.6 KM Plot
THCA rs118065458 chr16:79276906 G/A 5.77E-12 495 31.5 31.67 19.35 KM Plot
THCA rs118130888 chr7:44330903 G/A 1.56E-5 498 31.83 29.9 18.43 KM Plot
THCA rs11815538 chr10:81616952 G/A 9.58E-10 486 31.72 30.78 14.52 KM Plot